RNA Detection

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References



  1. Liu N, Pan T (2016) N6-methyladenosine-
    encoded epitranscriptomics. Nat Struct Mol
    Biol 23(2):98–102. doi:10.1038/nsmb.3162

  2. Fu Y, Dominissini D, Rechavi G, He C (2014)
    Gene expression regulation mediated through
    reversible m(6)A RNA methylation. Nat Rev
    Genet 15(5):293–306. doi:10.1038/nrg3724

  3. Dominissini D, Moshitch-Moshkovitz S,
    Schwartz S, Salmon-Divon M, Ungar L, Osen-
    berg S, Cesarkas K, Jacob-Hirsch J, Amariglio
    N, Kupiec M, Sorek R, Rechavi G (2012)
    Topology of the human and mouse m6A
    RNA methylomes revealed by m6A-seq.
    Nature 485(7397):201–206. doi:10.1038/
    nature11112

  4. Dominissini D, Nachtergaele S, Moshitch-
    Moshkovitz S, Peer E, Kol N, Ben-Haim MS,
    Dai Q, Di Segni A, Salmon-Divon M, Clark
    WC, Zheng G, Pan T, Solomon O, Eyal E,
    Hershkovitz V, Han D, Dore LC, Amariglio
    N, Rechavi G, He C (2016) The dynamic N
    (1)-methyladenosine methylome in eukaryotic
    messenger RNA. Nature 530(7591):441–446.
    doi:10.1038/nature16998

  5. Carlile TM, Rojas-Duran MF, Zinshteyn B,
    Shin H, Bartoli KM, Gilbert WV (2014) Pseu-
    douridine profiling reveals regulated mRNA
    pseudouridylation in yeast and human cells.
    Nature 515(7525):143–146. doi:10.1038/
    nature13802

  6. Schwartz S, Bernstein DA, Mumbach MR,
    Jovanovic M, Herbst RH, Leon-Ricardo BX,
    Engreitz JM, Guttman M, Satija R, Lander ES,
    Fink G, Regev A (2014) Transcriptome-wide
    mapping reveals widespread dynamic-regulated
    pseudouridylation of ncRNA and mRNA. Cell
    159(1):148–162. doi:10.1016/j.cell.2014.08.
    028
    7. Lovejoy AF, Riordan DP, Brown PO (2014)
    Transcriptome-wide mapping of pseudouri-
    dines: pseudouridine synthases modify specific
    mRNAs inS. cerevisiae. PLoS One 9(10):
    e110799. doi:10.1371/journal.pone.
    0110799
    8. Squires JE, Patel HR, Nousch M, Sibbritt T,
    Humphreys DT, Parker BJ, Suter CM, Preiss T
    (2012) Widespread occurrence of 5-
    methylcytosine in human coding and non-
    coding RNA. Nucleic Acids res 40
    (11):5023–5033. doi:10.1093/nar/gks144
    9. Schaefer M, Pollex T, Hanna K, Lyko F (2009)
    RNA cytosine methylation analysis by bisulfite
    sequencing. Nucleic Acids res 37(2):e12.
    doi:10.1093/nar/gkn954

  7. Birkedal U, Christensen-Dalsgaard M, Krogh
    N, Sabarinathan R, Gorodkin J, Nielsen H
    (2015) Profiling of ribose methylations in
    RNA by high-throughput sequencing. Angew
    Chem Int 54(2):451–455. doi:10.1002/anie.
    201408362

  8. Marchand V, Blanloeil-Oillo F, Helm M,
    Motorin Y (2016) Illumina-based RiboMeth-
    Seq approach for mapping of 2^0 - O-Me residues
    in RNA. Nucleic Acids res 44(16):e135.
    doi:10.1093/nar/gkw547

  9. Schmitt ME, Brown TA, Trumpower BL
    (1990) A rapid and simple method for prepara-
    tion of RNA fromSaccharomyces cerevisiae.
    Nucleic Acids Res 18(10):3091–3092.
    PMCID: PMC330876

  10. Ryohei U (2008) A rapid protocol for isolation
    of intact RNA fraction of specific molecular
    weight for synthesis of large-sized cDNAs.
    Ann Microbiol 58:765–769


48 Lilia Ayadi et al.

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