- Start the acquisition of the basal oxygen consumption rate
 (JO 2 ) until reaching a steady state (usually ~1–2 min, Fig.2).
- Add 3μl of the respiratory-chain ATP synthase inhibitor oli-
 gomycin (stock: 1 mg/ml; final concentration: 1.5μg/ml)
 with a Hamilton syringe through the cap of the oxygraph
 chamber and measureJO 2 during 1–2 min until reaching a
 steady state. The oligomycin-sensitiveJO 2 corresponds to the
 mitochondrial respiration coupled to ATP synthesis and the
 oligomycin-insensitive JO 2 to the proton leak though the
 mitochondrial inner membrane.
- Add 2μl of the OXPHOS uncoupler CCCP (prepare an inter-
 mediate solution of 0.5 mM by mixing 10μl of the 100 mM
 stock with 990μl of DMSO; final concentration: 0.5μM;see
 Note 7) and measureJO 2 during 1–2 min until reaching a
 steady state in order to assess the maximal mitochondrial respi-
 ratory rate in uncoupled state.
- Add 3μl of the respiratory-chain complex III inhibitor anti-
 mycin (stock: 100μg/ml; final concentration: 0.15μg/ml;see
 Note 8) and 2.5μl of the respiratory-chain complex I inhibitor
 rotenone (stock: 2 mM; final concentration: 2.5μM). Measure
 JO 2 during 1–2 min until reaching a steady state in order to
 assess the non-mitochondrial respiration.
- Wash carefully the oxygraph chamber after each measure with
 mQ water (three times), then 70% ethanol (three times) and
 again mQ water (three times), in order to remove any remain-
 ing traces of inhibitors.
Fig. 2Methods for studying mitochondrial bioenergetics in intact cells. The oxygen consumption rates (JO 2 )of
primary or cultured intact cells are determined by measuring the decay of oxygen concentration in time (slope)
in various respiratory states (a,b). The basalJO 2 can be measured in the absence (endogenous) or presence
of various exogenous substrates (glucose, fatty acids, etc.). The subsequent step-by-step additions of
oligomycin (respiratory-chain ATP synthase inhibitor), CCCP (OXPHOS uncoupler), and antimycin
(respiratory-chain complex III inhibitor) plus rotenone (respiratory-chain complex I inhibitor) allow to assess
the mitochondrial respiration coupled to ATP synthesis (oligomycin-sensitive JO 2 ), the proton leak
(oligomycin-insensitiveJO 2 ), the maximal respiratory rate in uncoupled state, and the non-mitochondrial
respiration (antimycin/rotenone-insensitiveJO^2 ), respectively. Adapted in part from [19]
Methods for Assessing Mitochondrial OXPHOS 279