LITERATURE CITED LC–15
- Mallet, J., and M. Joron. 1999. Evolution of diversity in warning color
and mimicry: polymorphisms, shifting balance, and speciation. Annu.
Rev. Ecol. Syst. 30: 201–233. - Martin, W., and 9 others. 2002. Evolutionary analysis of Arabidopsis,
cyanobacterial, and chloroplast genomes reveals plastid phylogeny
and thousands of cyanobacterial genes in the nucleus. Proc. Natl.
Acad. Sci. 99: 12246–12251. - Mittelbach, G. G., and D. W. Schemske. 2015. Ecological and
evolutionary perspectives on community assembly. Trends Ecol. Evol.
30: 241–247. - Moran, N. A. 2007. Symbiosis as an adaptive process and source of
phenotypic complexity. Proc. Natl. Acad. Sci. USA 104: 8627–8633. - Moran, N. A., and P. Baumann. 1994. Phylogenetics of
cytoplasmically inherited microorganisms of arthropods. Trends Ecol.
Evol. 9: 15–20. - Muchhala, N., and J. D. Thomson. 2009. Going to great lengths:
Selection for long corolla tubes in an extremely specialized bat-
flower mutualism. Proc. R. Soc.Lond. B 276: 2147–2152. - Nicholson, J. K., and 6 others. 2012. Host-gut microbiota metabolic
interactions. Science 336: 1262–1267. - Nuismer, S. L., B. J. Ridenhour, and B. P. Oswald. 2007. Antagonistic
coevolution mediated by phenotypic differences between
quantitative traits. Evolution 61: 1823–1834. - Page, R. D. M. 2002. Introduction. In R. D. M. Page (ed.), Tangled
Trees: Phylogeny, Cospeciation, and Coevolution, pp. 1–21. University of
Chicago Press, Chicago. - Pauw, A., J. Stofberg, and R. J. Waterman. 2009. Flies and flowers in
Darwin’s race. Evolution 63: 268–279. - Pellmyr, O., and J. Leebens-Mack. 1999. Forty million years of
mutualism: Evidence for Eocene origin of the yucca-yucca moth
association. Proc. Natl. Acad. Sci. USA 96: 9178–9183. - Pfennig, D. W., and K. S. Pfennig. 2010. Character displacement and
the origins of diversity. Am. Nat. 176: S26–S44. - Porco, T. C., J. O. Lloyd-Smith, K. L. Gross, and A. P. Galvani. 2005.
The effect of treatment on pathogen virulence. J. Theor. Biol. 233:
91–102. - Read, A. F., and 8 others. 2015. Imperfect vaccination can enhance
the transmission of highly virulent pathogens. PLoS Biol. 13 (7), no.
e1002198. - Rezende, E. L., P. Jordano, and J. Bascomte. 2007. Effects of
phenotypic complementarity and phylogeny on the nested structure
of mutualistic networks. Oikos 116: 1919–1929. - Robinson, B. W., D. S. Wilson, and A. S. Margosian. 2000. A pluralistic
analysis of character release in pumpkinseed sunfish (Lepomis
gibbosus). Ecology 81: 2799–2812. - Rothstein, S. I., and S. K. Robinson (eds.). 1998. Parasitic Birds and
Their Hosts: Studies in Coevolution. Oxford University Press, NY. - Schluter, D. 2000. The Ecology of Adaptive Radiation. Oxford
University Press, Oxford. - Siepelski, A. M., and C. W. Benkman. 2007. Convergent patterns in
the selection mosaic for two North American bird-dispersed pines.
Ecol. Monogr. 77: 203–220. - Slatkin, M. 1980. Ecological character displacement. Ecology 61:
163–177. - Stuart, Y. E., T. S. Campbell, P. A. Hohenlohe, R. G. Reynolds, L. J.
Revell, and J. B. Losos. 2014. Rapid evolution of a native species
following Invasion by a congener. Science 346: 463–466. - Taper, M. L., and T. J. Case. 1992. Coevolution among competitors.
Oxford Surv. Evol. Biol. 8: 63–109. - Terborgh, J. 2012. Enemies maintain hyperdiverse tropical forests.
Am. Nat. 179: 303–314. - Thompson, J. N. 1994. The Coevolutionary Process. University of
Chicago Press, Chicago. - Thompson, J. N. 2009. The coevolving web of life. Am. Nat. 173:
125–140.
74. Thompson, J. N. 2013. Relentless Evolution. University of Chicago
Press, Chicago and London.
75. Timmermans, M. J. T. N., and 12 others. 2014. Comparative genetics
of the mimicry switch in Papilio dardanus. Proc. R. Soc. Lond. B 281:
20140645.
76. Toju, H., and T. Sota. 2006. Imbalance of predator and prey
armament: Geographic clines in phenotypic interface and natural
selection. Am. Nat. 167: 105–117.
77. Uesugi, A., and A. Kessler. 2013. Herbivore exclusion drives the
evolution of plant competitiveness via increased allelopathy. New
Phytol. 198: 916–924.
78. Ullstrup, A. J. 1972. The impacts of the southern corn leaf blight
epidemic of 1970–1971. Annu. Rev. Phytopathol. 19: 37–50.
79. Van Valen, L. 1973. A new evolutionary law. Evol. Theory 1: 1–30.
80. Webb, C. O. 2000. Exploring the phylogenetic structure of ecological
communities: An example for rain forest trees. Am. Nat. 156: 145–
155.
81. Weese, D. J., K. D. Heath, B. T. M. Dentlinger, and J. A. Lau.
2015. Long-term nitrogen addition causes the evolution of less-
cooperative mutualists. Evolution 69: 631–642.
82. Winkler, I. S., and C. Mitter. 2008. The phylogenetic dimension of
insect-plant interactions: A review of recent evidence. In K. J. Tilmon
(ed.), Specialization, Speciation, and Radiation: The Evolutionary Biology
of Herbivorous Insects, pp. 240–263. University of California Press,
Berkeley.
83. Woolhouse, M. E. J., D. T. Haydon, and R. Antia. 2005. Emerging
pathogens: The epidemiology and evolution of species jumps. Trends
Ecol. Evol. 20: 238–244.
84. Yuan, Y., and 7 others. 2013. Enhanced allelopathy and competitive
ability of invasive plant Solidago canadensis in its introduced range. J.
Plant Ecol. 6: 253–263.
CHAPTER 14
- Adams, K. L., and J. D. Palmer. 2003. Evolution of mitochondrial gene
content: Gene loss and transfer to the nucleus. Mol. Phylogenet. Evol.
29: 380–395. - Arnegard, M. E., D. J. Zwickl, Y. Lu, and H. H. Zakon. 2010. Old gene
duplication facilitates origin and diversification of an innovative
communication system—twice. Proc. Natl. Acad. Sci. USA 107:
22172–22177. - Batut, B., C. Knibbe, G. Marais, and V. Daubin. 2014. Reductive
genome evolution at both ends of the bacterial population size
spectrum. Nat. Rev. Microbiol. 12: 841–850. - Batzer, M. A., and P. L. Deininger. 2002. Alu repeats and human
genomic diversity. Nat. Rev. Genet. 3: 370–379. - Belancio, V. P., D. J. Hedges, and P. Deininger. 2008. Mammalian non-
LTR retrotransposons: For better or worse, in sickness and in health.
Genome Res. 18: 343–358. - Bennett, G. M., and N. A. Moran. 2013. Small, smaller, smallest: The
origins and evolution of ancient dual symbioses in a phloem-feeding
insect. Genome Biol. Evol. 5: 1675–1688. - Bhutkar, A., S. W. Schaeffer, S. M. Russo, M. Xu, T. F. Smith, and
W. M. Gelbart. 2008. Chromosomal rearrangement inferred from
comparisons of 12 Drosophila genomes. Genetics 179: 1657–1680. - Bird, D. M., J. T. Jones, C. H. Opperman, T. Kikuchi, and E. G. J.
Danchin. 2015. Signatures of adaptation to plant parasitism in
nematode genomes. Parasitology 142: S71–S84. - Bosco, G., P. Campbell, J. T. Leiva-Neto, and T. A. Marko. 2007.
Analysis of Drosophila species genome size and satellite DNA
content reveals significant differences among strains as well as
between species. Genetics 177: 1277–1290. - Brenchley, R., and 28 others. 2012. Analysis of the breadwheat
genome using whole-genome shotgun sequencing. Nature 491:
705–710.
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