Synthetic Biology Parts, Devices and Applications

(Nandana) #1

Table 8.1


Developed RNAi switches.


References

An

et al

. [10]


Beisel

et al

. [11]


Kumar et al.

[12]

Masu et al

. [13]


Beisel

et al

. [14]


Kumar

et al

. [15]


Saito

et al

. [16]


Kashida et al

. [17]


Afonin et al

. [18]


Velagapudi et al

. [19]


Input

Small molecule (theophylline)

Small molecule (theophylline, hypoxanthine)

Small molecule (theophylline)

RNA

Small molecule (theophylline, hypoxanthine)

Chemically modified RNA

Archaeal protein (L7Ae)

Human protein (U1A, NF

κB)

Chemically modified DNA

Small molecule library

Dose

~10

mM

~5

mM

~3

mM

~500

nM

~5

mM

~500

nM

Plasmid expression

Plasmid expression

~500

nM

~40

μM

Based RNA

shRNA

shRNA

Pri‐miRNA

siRNA

Pri‐miRNA

Pri‐miRNA

+
siRNA

shRNA

shRNA

siRNA

Pre‐miRNA

Inhibiting machinery

Dicer

Dicer

Drosha

Dicer

Drosha

Drosha

+
Dicer

Dicer

Dicer

Dicer

Drosha

Switch

ON


OFF

ON


OFF

OFF


ON

OFF


ON

ON


OFF

OFF


ON

ON


OFF

ON


OFF

OFF


ON

ON


OFF

Target gene

EGFP, DsRed

EGFP

EGFP

Luciferase

EGFP

EGFP, DsRed

EGFP, antiapoptotic gene (Bcl‐xL)

EGFP

EGFP, HIV‐1 Gag‐pol glycoprotein

Proapoptotic gene (FOXO1)

Cell type

HEK 293

HEK 293‐EGFP

HEK 293

HeLa

HEK293(T), HeLa, MDA‐MB‐231, HEK293T‐EGFP

HEK 293

HeLa, HeLa‐EGFP

HEK293FT

HeLa, MDA‐MB231, MDA‐MB231‐EGFP

MCF7
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