Table 1(continued)ToolDescriptionRequirementsTypeInterfaceOperatingsystemPrograminglanguages ReferencesBatch effect removalBatch effectremovalBatch effect removal is a methodbased on a residual neuralnetwork, trained to minimizethe maximum meandiscrepancy (MMD) betweenthe multivariate distributionsof two replicates, measured indifferent batchesNAPackageCommandlineUnix/LinuxPython, R [115]350 Yungang Xu and Xiaobo Zhou