- IDF diabetes atlas–Home. http://www.
diabetesatlas.org/
- Beckman JA, Paneni F, Cosentino F et al
(2013) Diabetes and vascular disease: patho-
physiology, clinical consequences, and medical
therapy: part II. Eur Heart J 34:2444–2456.
https://doi.org/10.1093/eurheartj/eht142
- Creager MA, Lu ̈scher TF, Cosentino F et al
(2003) Diabetes and vascular disease. Patho-
physiology, clinical consequences, and medical
therapy: part I. Circulation 108:1527–1532.
https://doi.org/10.1161/01.CIR.
0000091257.27563.32
- Jung CH, Baek AR, Kim KJ et al (2013) Asso-
ciation between cardiac autonomic neuropathy,
diabetic retinopathy and carotid atherosclerosis
in patients with type 2 diabetes. Endocrinol
Metab (Seoul) 28:309–319.https://doi.org/
10.3803/EnM.2013.28.4.309
- Lin Y, Sun Z (2010) Current views on type
2 diabetes. J Endocrinol 204:1–11.https://
doi.org/10.1677/JOE-09-0260
- Fu Z, Gilbert ER, Liu D (2013) Regulation of
insulin synthesis and secretion and pancreatic
Beta-cell dysfunction in diabetes. Curr Diabe-
tes Rev 9:25–53.https://doi.org/10.2174/
157339913804143225
- Majithia AR, Florez JC (2009) Clinical transla-
tion of genetic predictors for type 2 diabetes.
Curr Opin Endocrinol Diabetes Obes
16:100–106. https://doi.org/10.1097/
MED.0b013e3283292354
- Prokopenko I, McCarthy MI, Lindgren CM
(2008) Type 2 diabetes: new genes, new
understanding. Trends Genet 24:613–621.
https://doi.org/10.1016/j.tig.2008.09.004
- Ridderstra ̊le M, Groop L (2009) Genetic dis-
section of type 2 diabetes. Mol Cell Endocrinol
297:10–17. https://doi.org/10.1016/j.mce.
2008.10.002
- Stancˇa ́kova ́A, Laakso M (2016) Genetics of
type 2 diabetes. Endocr Dev 31:203–220.
https://doi.org/10.1159/000439418
- Dominguez V, Raimondi C, Somanath S et al
(2011) Class II phosphoinositide 3-kinase reg-
ulates exocytosis of insulin granules in pancre-
atic?? Cells. J Biol Chem 286:4216–4225.
https://doi.org/10.1074/jbc.M110.200295
- Brazma A, Hingamp P, Quackenbush J et al
(2001) Minimum information about a micro-
array experiment (MIAME)-toward standards
for microarray data. Nat Genet 29:365–371.
https://doi.org/10.1038/ng1201-365
- Yeung N, Cline MS, Kuchinsky A et al (2008)
Exploring biological networks with Cytoscape
software. Curr Protoc Bioinformatics.https://
doi.org/10.1002/0471250953.bi0813s23
- Gautier L, Cope L, Bolstad BM et al (2004)
Affy – analysis of Affymetrix GeneChip data at
the probe level. Bioinformatics 20:307–315.
https://doi.org/10.1093/bioinformatics/
btg405
- Neuwirth E. (2014) RColorBrewer: Color-
Brewer palettes. R Packag version 11–2:
https://cran.R--project.org/pac
kage¼RColorBrewer. https://cran.r-project.
org/web/packages/RColorBrewer/index.
html
- Wilson CL, Miller CJ (2005) Simpleaffy: a bio-
conductor package for Affymetrix quality con-
trol and data analysis. Bioinformatics
21:3683–3685.https://doi.org/10.1093/bio
informatics/bti605
- Ritchie ME, Phipson B, Wu D et al (2015)
Limma powers differential expression analyses
for RNA-sequencing and microarray studies.
Nucleic Acids Res 43:e47.https://doi.org/
10.1093/nar/gkv007
- Carlson M (2016) hgu133a.db: Affymetrix
Human Genome U133 Set annotation data
(chip hgu133a)
- Revelle W (2017) Psych: procedures for per-
sonality and psychological research. North-
western University, Evanston, Illinois, USA.
https://CRAN.R-project.org/package¼psych
Version¼1.7.5
- Gautier L, Irizarry R, Cope L (2009) Descrip-
tion of affy. Changes 2009:1–29
- Breuer K, Foroushani AK, Laird MR (2013)
InnateDB: systems biology of innate immunity
and beyond–recent updates and continuing
curation. Nucleic Acids Res 41:1228–1233.
https://doi.org/10.1093/nar/gks1147
- Lynn DJ, Winsor GL, Chan C (2008) Inna-
teDB: facilitating systems-level analyses of the
mammalian innate immune response. Mol Syst
Biol 4:218. https://doi.org/10.1038/msb.
2008.55
- Orchard S, Salwinski L, Kerrien S (2007) The
minimum information required for reporting a
molecular interaction experiment (MIMIx).
Nat Biotechnol 25:894–898. https://doi.
org/10.1038/nbt1324
- Cline MS, Smoot M, Cerami E (2007) Integra-
tion of biological networks and gene expression
data using Cytoscape. Nat Protoc
2:2366–2382. https://doi.org/10.1038/
nprot.2007.324
Building Biological Networks from Gene Expression Data 197
