Computational Methods in Systems Biology
Bio-curation for Cellular Signalling: The KAMI Project 9 –forresidues, an attributeaawith values in the set of twenty one-letter ...
10 R. Harmer et al. The currentsemanticaction graph ofKAMIis shown in Fig. 3. It defines three types of regions—kinasedomains,ph ...
Bio-curation for Cellular Signalling: The KAMI Project 11 AGSAG MM Fig. 4.The (partial) hierarchy ofKAMI AG is assigned to t ...
12 R. Harmer et al. gene SH2-pY SH2 phos phos:1 Fig. 6.An example of semantic nugget gene SH2-pY SH2 Y phos aa:Y phos:1 Fig. 7.A ...
Bio-curation for Cellular Signalling: The KAMI Project 13 The geneShc1has a residue with three admissible values forpos. We repr ...
14 R. Harmer et al. protein definitions and calculates the instantiation of nuggets to that collection of gene products,i.e.thec ...
Bio-curation for Cellular Signalling: The KAMI Project 15 For example, given an input of the form ‘Grb2’s SH2 domain binds Shc1 ...
16 R. Harmer et al. Shc1 #4,#8 SH2 Grb2 pos:317aa:Y phos:1 EGFR phos:1 The ability to express such disjunctive statements means ...
Bio-curation for Cellular Signalling: The KAMI Project 17 not just individual PPIs, together with a curation procedure which exp ...
18 R. Harmer et al. Acknowledgements.This work was sponsored by the Defense Advanced Research Projects Agency (DARPA) and the U. ...
Bio-curation for Cellular Signalling: The KAMI Project 19 Laurent, J.: Causal analysis of rule-based models of signaling pathwa ...
RegularPapers ...
Quantitative Regular Expressions for Arrhythmia Detection Algorithms Houssam Abbas1(B), Alena Rodionova^2 , Ezio Bartocci^2 , Sc ...
24 H. Abbas et al. (^0020004000) Time (ms) 6000 8000 10000 12000 50 100 150 200 250 300 Signal (V) (^20004000) Time 6000 8000 10 ...
Quantitative Regular Expressions for Arrhythmia Detection Algorithms 25 theOnsetdiscriminator compares the average heart rate in ...
26 H. Abbas et al. efficient. The syntax and semantics of the logics will be introduced informally as they are outside the scope ...
Quantitative Regular Expressions for Arrhythmia Detection Algorithms 27 andw 2 , and QREsf,g,split−op(f,g) mapswto the cost valu ...
28 H. Abbas et al. than discrimination, and offers a strong argument for the versatility and power of QREs in medical-device alg ...
Quantitative Regular Expressions for Arrhythmia Detection Algorithms 29 3.2 Wavelet Characterization of Peaks Consider the signa ...
30 H. Abbas et al. In the next section we show how WPM can be formalized using Quantitative Regular Expressions. 3.3 Blanking Ch ...
«
1
2
3
4
5
6
7
8
9
10
»
Free download pdf