Systems Biology (Methods in Molecular Biology)

(Tina Sui) #1

  1. Dozmorov MG (2009) Unique patterns of
    molecular profiling between human prostate
    cancer LNCaP and PC-3 cells. Prostate 69
    (10):1077–1090

  2. MuraliKrishna PS (2005) RNA interference-
    directed knockdown of urokinase plasmino-
    gen activator and urokinase lasminogen acti-
    vator receptor inhibits prostate cancer cell
    invasion, survival, and tumorigenicity in vivo.
    J Biol Chem 280(43):36529–36540

  3. Lo ́pez-La ́zaro M (2008) The Warburg effect:
    why and how do cancer cells activate glycoly-
    sis in the presence of oxygen? Science
    8:305–312

  4. Gatenby ET, Gawlinski AF, Gmitro KB, Gil-
    lies RJ (2006) Acid-mediated tumor invasion:
    a multidisciplinary study. Cancer Res 66
    (10):5216–5224

  5. Rieumont J, Nieto JM, Garcı ́a JM (1997) The
    rate of Entropy Production as a mean to
    determinate the most important reactions
    step in Belousov Zhabotinsky reaction. Anales
    de Quı ́mica 93:147–152

  6. Izquierdo-Kulich E, Alonso-Becerra E,
    Nieto-Villar JM (2011) Entropy production
    rate for avascular tumor growth. J Mod Phys
    2(06):615

  7. Li X, Dash RK, Pradhan RK, Qi F, Thompson
    M et al (2010) A database of thermodynamic
    quantities for the reactions of glycolysis and
    the tricarboxylic acid cycle. J Phys Chem B
    144:16068–16082

  8. Alberty RA (2006) Biochemical thermody-
    namics: applications of mathematica. Wiley-
    Interscience, Hoboken, NJ

  9. Montero S, Martin RR, Guerra A,
    Casanella O, Cocho G, Nieto-Villar JM
    (2016) Cancer glycolysis I: entropy produc-
    tion and sensitivity analysis in stationary state.
    J Adenocarcinoma 1:1–8

  10. Parks SK, Chiche J, Pouysse ́gur J (2013) Dis-
    rupting proton dynamics and energy metabo-
    lism for cancer therapy. Nat Rev Cancer 13
    (9):611–623

  11. Schito L, Semenza GL (2016) Hypoxia-
    inducible factors: master regulator of cancer
    progression. Trend Cancer 2(12):758–770

  12. Jun JC, Rathore A, Younas H, Gilkes D,
    Polotsky VY (2017) Hypoxia-inducible fac-
    tors and cancer. Curr Sleep Med Rep 3
    (1):1–10

  13. Martyushev LM, Seleznev VD (2006) Maxi-
    mum entropy production principle in physics,
    chemistry and biology. Phys Rep 264(1):1–45

  14. Nelson DL, Cox N (2013) Lehninger. Prin-
    ciples of biochemistry, 6th edn. W. H. Free-
    man and Company, New York

  15. Lozupone F, Borghi M, Marzoli F,
    Azzarito T, Matarrese P, Lessi E (2015)
    TM9SF4 is a novel V-ATPase-interacting pro-
    tein that modulates tumor pH alterations
    associated with drug resistance and invasive-
    ness of colon cancer cells. Oncogene 34
    (40):5163–5174

  16. Fais S, Venturi G, Gatenby B (2014) Micro-
    environmental acidosis in carcinogenesis and
    metastases: new strategies in prevention and
    therapy. Cancer 33:195–108

  17. Granja S, Tavares-Valente D, Queiro ́s O, Bal-
    tazar F (2016) Value of pH regulators in the
    diagnosis, prognosis and treatment of cancer.
    Semin Cancer Biol. https://doi.org/10.
    1016/j.semcancer.2016.12.003

  18. Sennoune SR, Bakunts K, Martinez GM,
    Chua-tuan JL, Kebir Y, Attaya MN,
    Martinez-Zaguilan R (2004) Vacuolar Hþ
    ATPase in human breast cancer cells with dis-
    tinct metastatic potential: distribution and
    functional activity. Am J Physiol
    286:1443–1452

  19. Pelicano H, Martin DS, Xu RH, Huang P
    (2006) Glycolysis inhibition for anticancer
    treatment. Oncogene 25(34):33–46

  20. Icard P, Lincet H (2012) A global view of the
    biochemical pathways involved in the regula-
    tion of the metabolism of cancer cells. Bio-
    chim Biophys Acta 1826(2):423–433

  21. Higashimura Y, Nakajima Y, Yamaji R (2011)
    Up-regulation of glyceraldehyde-3-phos-
    phate dehydrogenase gene expression by
    HIF-1 activity depending on Sp1 in hypoxic
    breast cancer cells. Arch Biochem Biophys
    509(1):1–8

  22. Liu K, Tang Z, Huang A, Chen P, Liu P, Yang
    J (2017) Glyceraldehyde-3-phosphate dehy-
    drogenase promotes cancer growth and
    metastasis through upregulation of SNAIL
    expression. Int J Oncol 50:252–262

  23. Li X, Gu J, Zhou Q (2015) Review of aerobic
    glycolysis and its key enzymes - new targets
    for lung cancer therapy. Lung Cancer
    6:17–24

  24. Draoui N, Feron O (2011) Lactate shuttles at
    a glance: from physiological paradigms to
    anti-cancer treatments. Dis Model Mech
    4:727–732

  25. Hay N (2016) Reprogramming glucose
    metabolism in cancer: can it be exploited for
    cancer therapy? Nat Rev Cancer 16:635–649

  26. Mathupala SP, Ko YH, Pedersen PL (2006)
    Hexokinase II: cancer’s double-edged sword
    acting as both facilitator and gatekeeper of
    malignancy when bound to mitochondria.
    Oncogene 25:4777–4786


168 Sheyla Montero et al.

Free download pdf