Systems Biology (Methods in Molecular Biology)

(Tina Sui) #1

  1. Weinberg RA (1995) The retinoblastoma
    protein and cell cycle control. Cell
    81:323–330

  2. Paget S (1989) The distribution of secondary
    growths in cancer of the breast. 1889. Cancer
    Metastasis Rev 8(2):98–101

  3. Fidler IJ, Poste G (2008) The “seed and soil”
    hypothesis revisited. Lancet Oncol 9(8):808

  4. Wang X et al (2011) Residual embryonic cells
    as precursors of a Barrett’s-like metaplasia.
    Cell 145(7):1023–1035

  5. Koshland DE, Goldbeter A, Stock JB (1982)
    Amplification and adaptation in regulatory
    and sensory systems. Science (New York,
    NY) 217(4556):220–225

  6. Ao P (2009) Global view of bionetwork
    dynamics: adaptive landscape. J Genet Geno-
    mics 36(2):63–73

  7. Zhu XM et al (2004) Robustness, stability and
    efficiency of phage lambda genetic switch:
    dynamical structure analysis. J Bioinform
    Comput Biol 2(4):785–817

  8. Li F et al (2004) The yeast cell-cycle network
    is robustly designed. Proc Natl Acad Sci USA
    101(14):4781–4786

  9. Zhu X et al (2007) Efficiency, robustness, and
    stochasticity of gene regulatory networks in
    systems biology:λswitch as a working exam-
    ple. In: Choi S (ed) Introduction to systems
    biology. Humana, New York, pp 336–371

  10. Bizzarri M et al (2011) Fractal analysis in a
    systems biology approach to cancer. Semin
    Cancer Biol 21(3):175–182

  11. Pastan I, Gottesman M (1987) Multiple-drug
    resistance in human cancer. N Engl J Med 316
    (22):1388–1393

  12. Gimbrone MA et al (1972) Tumor dormancy
    in vivo by prevention of neovascularization. J
    Exp Med 136(2):261–276

  13. Hartwell LH et al (1999) From molecular to
    modular cell biology. Nature 402(6761
    Suppl):C47–C52

  14. Akhurst RJ, Derynck R (2001) TGF-βsignal-
    ing in cancer—a double-edged sword. Trends
    Cell Biol 11(Supplement 1):S44–S51

  15. Feng G-S (2012) Conflicting roles of mole-
    cules in hepatocarcinogenesis: paradigm or
    paradox. Cancer Cell 21(2):150–154

  16. Kauffman S (2008) Control circuits for deter-
    mination and transdetermination: interpret-
    ing positional information in a binary
    epigenetic code. In: Ciba foundation sympo-
    sium 29 - cell patterning. Wiley, Chichester,
    pp 201–221

  17. Auffray C, Chen Z, Hood L (2009) Systems
    medicine: the future of medical genomics and
    healthcare. Genome Med 1(1):2

  18. Hood L, Flores M (2012) A personal view on
    systems medicine and the emergence of pro-
    active P4 medicine: predictive, preventive,
    personalized and participatory. N Biotechnol
    29(6):613–624

  19. Chalancon G et al (2012) Interplay between
    gene expression noise and regulatory network
    architecture. Trends Genet 28(5):221–232

  20. Vital-Lopez FG, Memisˇevic ́ V, Dutta B
    (2012) Tutorial on biological networks.
    Wiley Interdiscip Rev Data Min Knowl Discov
    2(4):298–325

  21. Ao P et al (2008) Cancer as robust intrinsic
    state of endogenous molecular-cellular net-
    work shaped by evolution. Med Hypotheses
    70(3):678–684

  22. Wang G et al (2013) From Phage lambda to
    human cancer: endogenous molecular-
    cellular network hypothesis. Quant Biol 1
    (1):32–49

  23. Yuan R et al (2017) Cancer as robust intrinsic
    state shaped by evolution: a key issues review.
    Rep Prog Phys 80(4):042701

  24. Garber K (2001) Beyond the Nobel prize: cell
    cycle research offers new view of cancer. J Natl
    Cancer Inst 93(23):1766–1768

  25. Nurse P (2000) A long twentieth century of
    the cell cycle and beyond. Cell 100(1):71–78

  26. Takahashi K et al (2007) Induction of plurip-
    otent stem cells from adult human fibroblasts
    by defined factors. Cell 131(5):861–872

  27. Huang P et al (2011) Induction of functional
    hepatocyte-like cells from mouse fibroblasts by
    defined factors. Nature 475(7356):386–389

  28. Ferrell JE Jr, Tsai TY-C, Yang Q (2011) Mod-
    eling the cell cycle: why do certain circuits
    oscillate? Cell 144(6):874–885

  29. Spencer SL, Sorger PK (2011) Measuring and
    modeling apoptosis in single cells. Cell 144
    (6):926–939

  30. Meyer BJ, Maurer R, Ptashne M (1980) Gene
    regulation at the right operator (OR) of bac-
    teriophageλ: II. OR1, OR2, and OR3: their
    roles in mediating the effects of repressor and
    cro. J Mol Biol 139(2):163–194

  31. Yuh C-H, Bolouri H, Davidson EH (1998)
    Genomic cis-regulatory logic: experimental
    and computational analysis of a sea urchin
    gene. Science 279(5358):1896–1902

  32. Baker SG, Kramer BS (2011) Systems biology
    and cancer: promises and perils. Prog Biophys
    Mol Biol 106(2):410–413


242 Gaowei Wang et al.

Free download pdf