Topology in Molecular Biology
7 Combinatories and Topology of theβ-Sandwich andβ-Barrel Proteins 131 Fig. 7.1.The schematic representation of an immunoglobuli ...
132 A.E. Kister et al. 7.3.3 Structurally Based Sequence Alignment The essential element of our method is that it involves align ...
7 Combinatories and Topology of theβ-Sandwich andβ-Barrel Proteins 133 Fig. 7.2.Schematic representation of the barrel structure ...
134 A.E. Kister et al. Table 7.1.Identifying four families of sandwich-like proteins within 11 distinct genomes four protein fam ...
7 Combinatories and Topology of theβ-Sandwich andβ-Barrel Proteins 135 7.4 Common Structural and Sequence Features of Barrel-Lik ...
136 A.E. Kister et al. 7.4.3 Defining of theβ-Strands and Loops As mentioned above our Structural analysis is based on the infor ...
7 Combinatories and Topology of theβ-Sandwich andβ-Barrel Proteins 137 Table 7.2. The arrangement of the strands in the barrel s ...
138 A.E. Kister et al. Table 7.2.Continued. Fold Str Arrangement Sub-sheets 58 1k8h 1 6 7254 3B: 543 A: 2761 59 1ile 1 2- -6 3- ...
7 Combinatories and Topology of theβ-Sandwich andβ-Barrel Proteins 139 structures, which are formed by six strands (n∗= 6), is e ...
140 A.E. Kister et al. Fig. 7.3.The connection between the strands in two subsheets. (a) Two “short” edge strands in different s ...
7 Combinatories and Topology of theβ-Sandwich andβ-Barrel Proteins 141 7.4.8 Characterizing the Place of Distortion of Barrel St ...
142 A.E. Kister et al. protein structures (the single exception was found in the proteins described in the protein fold # 57, “D ...
7 Combinatories and Topology of theβ-Sandwich andβ-Barrel Proteins 143 7.4.12 The Two Hydrophobic Tetrahedrals Present the Struc ...
144 A.E. Kister et al. proposed search algorithm compares favorably with the powerful and widely used techniques based on hidden ...
7 Combinatories and Topology of theβ-Sandwich andβ-Barrel Proteins 145 C. Zhang, S.-H. Kim, Proteins: Struct. Funct. Gen. 40 , ...
8 The Structure of Collagen N. Rivier and J.-F. Sadoc Summary.We study the assembly of collagen molecules of the so-called fib- ...
148 N. Rivier and J.-F. Sadoc Fig. 8.1.Structure of collagen at various scales. (a) Single chainGly−X−Yform- ing a left-handed h ...
8 The Structure of Collagen 149 (c) Fibrils of arbitrary length (d) Intertwining of the chains within the molecule at a constant ...
150 N. Rivier and J.-F. Sadoc a cylinder. The cylinder is cut and flattened. This elegant geometric construc- tion cannot be con ...
8 The Structure of Collagen 151 The geometrical frustration (a) is resolved in (positively) curved space [6]. Hopf’s fibration o ...
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