Computational Chemistry

(Steven Felgate) #1
latter. Bettinger et al., 1997 (above) calculate the barrier to be 21 kJ mol"^1 (5 kcal mol"^1 ).
The G3MP2 method places the gas phase free energy of allene 283 kJ mol"^1 below that of
cyclopropylidene.


  1. Some examples are (a) Activation enthalpies of cytochrome-P450-mediated hydrogen
    abstractions; comparison of PM3, SAM1, and AM1 with a DFT method: Mayeno AN,
    Robinson JL, Yang RSH, Reisfeld B (2009) J Chem Inf Model 49:1692; (b) Pyruvate to
    lactate transformation catalyzed by L-lactate dehydrogenase, attempt to improve accuracy of
    semiempirical descriptors (AM1/MM): Ferrer S, Ruiz-Pernia JJ, Tunon I, Moliner V, Garcia-
    Viloca M, Gonzalez-Lafont A, Lluch JM (2005) J Chem Theory Comput 1:750; (c) Mecha-
    nism of tyrosine phosphorylation catalyzed by the insulin receptor tyrosine kinase (PM3):
    Pichierri F, Matsuo Y (2003) J Mol Struct (Theochem) 622:257; (d) A novel type of
    irreversible inhibitor for carboxypeptidase A (PM3): Chung SJ, Chung S, Lee HS, Kim
    E-J, Oh KS, Choi HS, Kim KS, Kim JJ, Hahn JH, Kim DH (2001) J Org Chem 66:6462

  2. Reference [92], p 157

  3. Information supplied by Dr. R. Johnson of the National Institutes of Standards and Techno-
    logy, USA (NIST): best fits to about 1100 vibrations of about 70 closed-shell molecules. An
    extensive collection of scaling factors is available on the NIST website (http://srdata.nist.
    gov/cccbdb/)

  4. Scott AP, Radom L (1996) J Phys Chem Phys Chem 100:16502

  5. Holder AJ, Dennington RD II (1997) J Mol Struct (Theochem) 401:207

  6. AM1, MP2(fc)/6-31G*, and experimental IR spectra were compared by the author for 18 of
    the 20 compounds in Fig. 6.2 (suitable IRs were not found for HOCl and CH 3 SH) and for these
    10: cyclopentane, cyclopentene, cyclopentanone, pyrrolidine, pyrrole, butanone, diethyl ether,
    1-butanol, 2-butanol, and tetrahydrofuran. On the basis of the relative intensities of the bands,
    of these 28 compounds only for six, HCN, CH 3 OH, H 2 C¼CH 2 , HOF, cyclopentene and
    cyclopentanone were both the AM1 and MP2 spectra similar to the experimental; for the
    others the MP2 IRs were closer to experiment

  7. Galabov B, Yamaguchi Y, Remington RB, Schaefer HF (2002) J Phys Chem A 106:819

  8. Healy EF, Holder A (1993) J Mol Struct (Theochem) 281:141

  9. Coolidge MB, Marlin JE, Stewart JJP (1991) J Comp Chem 12:948

  10. Reference 88, pp 74, 76–77, 80–82

  11. Hehre WJ, Radom L, Schleyer pvR, Pople JA (1986) Ab initio molecular orbital theory.
    Wiley, New York, Section 6.6

  12. Scheiner AC, Baker J, Andzelm JW (1997) J Comp Chem 18:775

  13. Cramer CJ (2004) Essentials of computational chemistry, 2nd edn. Wiley, Chichester, UK, p 309

  14. Anh NT, Frisson G, Solladie ́-Cavallo A, Metzner P (1998) Tetrahedron 54:12841

  15. Jensen F (2007) Introduction to computational chemistry, 2nd edn. Wiley, Hoboken, NJ, p 296

  16. Lendvay G (1994) J Phys Chem 98:6098

  17. Available from Hypercube Inc., http://www.hyper.com/

  18. Foresman JB, Frisch Æ (1996) Exploring chemistry with electronic structure methods, 2nd
    edn. Gaussian Inc, Pittsburgh, PA, p 218

  19. Levin RD, Lias SG (1982) Ionization potential and appearance potential measurements,
    1971–1981. National Bureau of Standards, Washington, DC

  20. Curtiss LA, Nobes RH, Pople JA, Radom L (1992) J Chem Phys 97:6766

  21. Dewar MJS, Rzepa HS (1978) J Am Chem Soc 100:784

  22. Reference [24], p 180

  23. Bachrach SM (2007) Computational organic chemistry. Wiley, Hoboken, NJ, p xv

  24. Enrico Fermi quoted to Freeman Dyson those words of von Neumann: Dyson F (2004)
    Nature 427:297

  25. Cramer CJ (2004) Essentials of computational chemistry, 2nd edn. Wiley, Chichester, UK,
    Table 2.1

  26. Cramer CJ (2004) Essentials of computational chemistry, 2nd edn. Wiley, Chichester, UK, p 157

  27. (a) Gasteiger J, Engel T (eds) (2004) Chemoinformatics: a textbook. Wiley, Weinheim,
    Germany; (b) Leach AR, Gille VJ (eds) (2003) An introduction to chemoinformatics.
    Springer, New York


442 6 Semiempirical Calculations

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