Coenzyme A (CoA)................................................ 36, 37,
162–165, 167–171, 173, 174
Conformational change....................................74, 75, 90,
134, 135, 139, 142, 146
C-S cleavage spectrophotometric assay........................169
30 ,5^0 -Cyclic di-guanylate (c-di-GMP)......................9, 193
Cystic fibrosis (CF) .........................................38, 39,107,
205, 227, 229
D
Delisea pulchra..............................................................276
50 -Deoxy-5^0 -(methylthio)adenosine (MTA).................37,
162–164, 172, 173, 175
Derivative..............................................49, 73, 78, 86, 87,
124, 205, 254, 264, 268, 276, 290
Dichlorophenolindophenol (DCPIP) colorimetric
assay...........................163, 165, 167–169, 174
Differential pulse voltammetry (DPV) .......................109,
110, 113, 114
Diffusible signal factor (DSF)
Burkholderiadiffusible dignal factor (BDSF)......... 98,
99, 101, 102, 104, 105, 193–200
cis-dodecenoic acid...................................99,193, 243
extraction...........................................................98–103
quantification...................................97–102, 104, 105
Dissociation constant...................................................... 73
DNA electrophoresis..................................312, 315, 316
DNA microarray..........................................276, 278, 281
E
Elastase................................. 25,291, 293, 294, 326, 334
Electrochemical detection of signals...................107–115
Electroporation..........................155, 314, 318, 320, 341
Electrospray ionization quadrupole time-of-flight mass
spectrometry (ESI-QToF-MS)........65, 66, 69
Enzyme-linked immunosorbent assay (ELISA)...........36,
38, 61–67, 69–71, 326, 328, 332, 344, 348,
350, 351
Exotoxin................................................................. 25, 363
F
Fluorescence
quenching.......................................................131–142
resonance energy transfer (FRET)...... 74, 75, 80, 81,
83–85, 87
spectroscopy............................................................132
Fluorescently-labeled dextran.......................................213
Fluorescent proteins (CFP, GFP and YFP)..................74,
75, 80–84, 87, 204–207, 211, 244, 245,
248–250, 276–278, 280, 281
Fluorophore maturation................................................. 82
Freeze microtomy ................................................206, 210
G
β-Galactosidase (lacZ)...........................5–7, 21, 298, 306
γ-butyrolactones (GBLs)
detection.........................................................117–127
extraction........................................................118–123
2-(1^0 -hydroxyoctyl)-3-hydroxymethylbutanolide
(Cp2)..................................133, 134, 136–140
3-hydroxymethylbutanolide (Cp1)..............133, 134,
136–138
GeLC-MS/MS shotgun proteomics...........................194
Ggene expression ..............................................3, 4, 9, 35,
107, 131, 145, 161, 191, 213, 243, 262, 353
Gram-negative bacteria
Acidithiobacillus ferrooxidans................................... 45
Agrobacterium tumefaciens................................4, 5, 7,
8, 10–16, 18, 20, 21, 146, 150, 298–300, 306
Bradyrhizobium japonicum...........40, 41, 43, 45, 190
Burkholderia cepacia................................97,200, 243
Burkholderia mallei........................................180, 190
Burkholderia pseudomallei................ 26, 49,180, 190
Burkholderia thailandensis.......................49,180, 190
Burkholderia vietnamiensis.....................................193
Chromobacterium violaceum................................4–10,
14–18, 20, 21
Escherichia coli.............................................19, 38, 74,
86, 137, 146–149, 152, 157, 165, 181, 185,
205, 207, 208, 211, 215, 314, 315, 318–321,
323, 329, 330, 334, 336, 337, 340, 341
Lysobacter enzymogenes.............................................. 97
Muricauda olearia................................298, 301, 303
Photorhabdus asymbiotica........................................156
Photorhabdus luminescens........................................155
Pseudomonas aeruginosa....................................5, 7, 9,
11, 25, 40, 49, 97, 107, 147, 180, 203, 213,
227, 243, 257, 276, 288, 325
Pseudomonas aureofaciens.......................................5, 7
Pseudomonas chloroaphis...............................40, 41, 43
Pseudomonas protegens............................................156
Pseudomonas putida......................259, 262, 263, 266
Rhodopseudomonas palustris...............................41–43,
45, 180, 190
Salmonella enterica.................................................147
Serratia marscesens...................................................... 5
Sinorhizobium meliloti............................................156
Stenotrophomonas maltophilia................................... 97
Vibrio cholera...........................................................257
Vibrio fischeri................................................. 3, 4,156,
205, 207, 257, 259, 260, 266, 268
Vibrio harveyi......................................................73, 74,
82–85, 87, 361
Xanthomonas campestris...........97, 99,156, 243–246
Xanthomonas hortorum...........................................244
Xanthomonas oryzae.......................................103, 156372
QUORUMSENSING
Index