AMPK Methods and Protocols

(Rick Simeone) #1

  1. Purified recombinant target protein. Target protein can be
    purified from cell lysate or purchased commercially. Store at
     80 C or according to the manufacturer’s instructions, and
    thaw on ice prior to use (seeNote 1).

  2. [γ-^32 P] ATP: 250μCi (3000 Ci/mmol) diluted to 10 mCi/ml
    and shielded in lead [1](seeNote 2).

  3. Adenosine 5^0 -monophosphate (AMP) solution: 10 mM AMP
    in distilled water. Store at 80 C and thaw on ice prior to
    use [ 1].

  4. Magnesium chloride (MgCl 2 ) solution: 250 mM MgCl 2 in
    distilled water. Store on ice.

  5. Heating block: must be capable of holding a constant temper-
    ature between 37C and 100C.

  6. Centrifuge tubes: must hold at least 50μl total volume.

  7. Buffer A: 50 mM HEPES, pH 7.4 (seeNotes 3and 4 ).


Protein Separation


  1. SDS-PAGE gels: commercially available.

  2. Tris-glycine running buffer: 0.025 M Tris, 0.192 M glycine,
    0.1% (w/v) SDS prepared in distilled water or obtained
    commercially.

  3. 4Laemmli sample buffer: 200 mM Tris–HCl, pH 6.8, 8%
    (w/v) SDS, 40% (v/v) glycerol, 4% (v/v)β-mercaptoethanol,
    0.05 M EDTA, 0.08% (w/v) bromophenol blue prepared in
    distilled water or obtained commercially.

  4. Vertical SDS-PAGE electrophoresis system: commercially
    available.

  5. Orbital shaker or rocker: commercially available.

  6. SDS-PAGE molecular weight markers: commercially available.

  7. Coomassie R-250 stain: 0.1% (w/v) Coomassie Brilliant Blue
    R-250, 5% (v/v) methanol prepared in 10% (v/v) glacial acetic
    acid and filtered through Whatman filter paper with a mini-
    mum grade of one to remove any aggregated stain. It is also
    commercially available.

  8. Destaining solution: 5% (v/v) methanol, 10% (v/v) acetic acid
    diluted in distilled water or commercially available.


Film Development


  1. Whatman paper: grade one or equivalent wide enough to cover
    the entire gel.

  2. Transparency sheets: commercially available.

  3. Laboratory tape: commercially available.

  4. Autoradiograph cassette: commercially available.


Identification and Validation of Novel Targets 101
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