AMPK Methods and Protocols

(Rick Simeone) #1
and let it dry. Resuspend with Milli-Q H 2 O. Dilute the samples
to be within the detection range.


  1. Dilution of the samples to meet the detection range is essential.
    When the samples contain high amounts of glycogen, the
    hydrolysis reaction leads to high amounts of glucose, which
    could interfere with the OxiRed probe. With concentrated
    samples, it is very common to see the pink and brown colors
    develop and then disappear. Dilute the samples to have accurate
    measurements.

  2. Avoid foaming or bubbles while reconstituting this mix since
    they could interfere with the readings later on.

  3. The reconstituted hydrolysis enzyme mix is stable for 2 months
    at 20 C. To avoid repetitive freeze/thaw cycles, aliquot the
    reconstituted hydrolysis enzyme mix and store in the dark at
     20 C. When using frozen aliquots, make sure to equilibrate
    it to room temperature before use because cold temperatures
    lower the enzyme activity, which would slow down the glyco-
    gen hydrolysis process.

  4. In several organisms and tissues, the presence of acid-insoluble
    pools of glycogen has been reported. These pools differ struc-
    turally from the acid-soluble glycogen. In this case, the degra-
    dation efficiency of glycogen by glucoamylase enzyme is
    different between samples, and the results obtained with this
    kit may not reflect the “real” glycogen concentration in the
    samples. In this situation, the determination of glycogen levels
    using other techniques such as periodic acid-Schiff or iodine
    staining of tissues/organisms is recommended.

  5. Similar toseeNotes 8and 9 , mix gently by pipetting up and
    down the development enzyme mix. This mix could be stored
    at 20 C in the dark for 2 months. Frozen aliquots are
    recommended to avoid repetitive freeze and thaw cycles.
    Bring to room temperature frozen aliquots before
    experimental use.

  6. These kits could be used as fluorimetric kits. In this case, the
    volume of hydrolysis enzyme mix used is lower. Consult
    Table1 for information. Black flat bottom 96-well plates
    should be used for the fluorimetric assay, and readings should
    be taken at Ex¼535 nm/Em¼587 nm.

  7. The sample volume depends on the glycogen concentration in
    these samples. It is recommended to test several dilutions of
    samples to make sure that the readings are within the standard
    curve range. For highly glycogen-rich samples, dilute your
    samples with the glycogen hydrolysis buffer.

  8. Accurate pipetting is important to get good results. Bubbles
    could lead to pipetting errors and interfere with the reading.


Biochemical Titration of Glycogen in Cells and Tissues 65
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