197Table 1
(continued)
Amplification/
Deletion Gene Ref.Immediate early response 3 (IER3) [ 14 ]
Insulin like growth factor 1 receptor (IGF1R) [ 12 – 14 ]
KRAS proto-oncogene, GTPase (KRAS) [ 12 ]
Kruppel like factor 12 (KLF12) [ 19 ]
Laminin subunit alpha 3 (LAMA3) [ 13 ]
Leucine rich repeat containing 37 member A3
(LRRC37A3)[ 11 ]Mediator of DNA damage checkpoint 1 (MDC1,
KIAA0170)[ 14 ]MET proto-oncogene (MET) [ 17 ]
Murine double minute-2 (MDM2) [ 29 ]
MutS homolog 2 (MSH2) [ 13 ]
MYB proto-oncogene like 2 (MYBL2) [ 13 , 14 ]
Myotubularin related protein 9 (MTMR9) [ 23 ]
Nei like DNA glycosylase 2 (NEIL2) [ 23 ]
NME/NM23 nucleoside diphosphate kinase 1 (NME1) [ 13 ]
Nuclear receptor coactivator 3 (NCOA3, AIB1) [ 12 , 14 ]
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
subunit alpha (PIK3CA)[ 12 ]Protein tyrosine phosphatase, non-receptor type 1
(PTPN1)[ 13 , 14 ]RAD51 recombinase (RAD51) [ 30 ]
Replication factor C subunit 3 (RFC3) [ 31 ]
Retinoic acid receptor alpha (RARA) [ 32 ]
Sarcospan (SSPN) [ 11 ]
Serpin Family E Member 1 (SERPINE1) [ 13 ]
Small nuclear ribonucleoprotein polypeptide N (SNRPN) [ 13 ]
Solute carrier family 25 member 29 (SLC25A29) [ 11 ]
SRY-box 1 (SOX1) [ 11 ]
SRY-box 7 (SOX7) [ 11 ]
Telomerase RNA component (TERC) [ 13 ]
The G-protein coupled bile acid receptor (TGR5) [ 33 ]
(continued)DNA Copy-Number in Esophageal Adenocarcinoma