Synthetic Biology Parts, Devices and Applications

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mRNA in the response to phosphosugar stress in Escherichia coli. Mol.
Microbiol., 54 , 1063–1075.
34 Pertzev, A.V. and Nicholson, A.W. (2006) Characterization of RNA sequence
determinants and antideterminants of processing reactivity for a minimal
substrate of Escherichia coli ribonuclease III. Nucleic Acids Res., 34 , 3708–3721.
35 MacRae, I.J. and Doudna, J.A. (2007) Ribonuclease revisited: structural insights
into ribonuclease III family enzymes. Curr. Opin. Struct. Biol., 17 , 138–145.
36 Ow, M.C., Perwez, T., and Kushner, S.R. (2003) RNase G of Escherichia coli
exhibits only limited functional overlap with its essential homologue, RNase E.
Mol. Microbiol., 49 , 607–622.
37 Deana, A. and Belasco, J.G. (2005) Lost in translation: the influence of
ribosomes on bacterial mRNA decay. Genes Dev., 19 , 2526–2533.
38 Vytvytska, O., Moll, I., Kaberdin, V.R., von Gabain, A. et al. (2000) Hfq (HF1)
stimulates ompA mRNA decay by interfering with ribosome binding. Genes
Dev., 14 , 1109–1118.
39 Komarova, A.V., Tchufistova, L.S., Dreyfus, M., and Boni, I.V. (2005) AU-rich
sequences within 5′ untranslated leaders enhance translation and stabilize
mRNA in Escherichia coli. J. Bacteriol., 187 , 1344–1349.
40 Makarova, O.V., Makarov, E.M., Sousa, R., and Dreyfus, M. (1995) Transcribing
of Escherichia coli genes with mutant T7 RNA polymerases: stability of lacZ
mRNA inversely correlates with polymerase speed. Proc. Natl. Acad. Sci. U.S.A.,
92 , 12250–12254.
41 Braun, F., Le Derout, J., and Régnier, P. (1998) Ribosomes inhibit an RNase E
cleavage which induces the decay of the rpsO mRNA of Escherichia coli. EMBO
J., 17 , 4790–4797.
42 Smith, A.M., Fuchs, R.T., Grundy, F.J., and Henkin, T.M. (2010) Riboswitch
RNAs: regulation of gene expression by direct monitoring of a physiological
signal. RNA Biol., 7 , 104–110.
43 Sharma, C.M. and Vogel, J. (2009) Experimental approaches for the discovery
and characterization of regulatory small RNA. Curr. Opin. Microbiol., 12 ,
536–546.
44 Storz, G., Vogel, J., and Wassarman, K.M. (2011) Regulation by small RNAs in
bacteria: expanding frontiers. Mol. cell, 43 , 880–891.
45 Aiba, H. (2007) Mechanism of RNA silencing by Hfq-binding small RNAs. Curr.
Opin. Microbiol., 10 , 134–139.
46 Vogel, J. and Luisi, B.F. (2011) Hfq and its constellation of RNA. Nat. Rev.
Microbiol., 9 , 578–589.
47 Raghavan, R., Groisman, E.a., and Ochman, H. (2011) Genome-wide detection
of novel regulatory RNAs in E. coli. Genome Res., 21 , 1487–1497.
48 Bandyra, K.J., Said, N., Pfeiffer, V., Górna, M.W. et al. (2012) The seed region of
a small RNA drives the controlled destruction of the target mRNA by the
endoribonuclease RNase E. Mol. Cell, 47 , 943–953.
49 Hussein, R. and Lim, H.N. (2011) Disruption of small RNA signaling caused by
competition for Hfq. Proc. Natl. Acad. Sci. U.S.A., 108 , 1110–1115.
50 Andrade, J.M., Pobre, V., Matos, A.M., and Arraiano, C.M. (2012) The crucial
role of PNPase in the degradation of small RNAs that are not associated with
Hfq. RNA (New York, N.Y.), 18 , 844–855.

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