Synthetic Biology Parts, Devices and Applications

(Nandana) #1

212 10 Programming Gene Expression by Engineering Transcript Stability Control and Processing in Bacteria


51 Sittka, A., Lucchini, S., Papenfort, K., Sharma, C.M. et al. (2008) Deep
sequencing analysis of small noncoding RNA and mRNA targets of the global
post-transcriptional regulator, Hfq. PLos Genet., 4 , e1000163.
52 Zhang, A., Wassarman, K.M., Rosenow, C., Tjaden, B.C. et al. (2003) Global
analysis of small RNA and mRNA targets of Hfq. Mol. Microbiol., 50 ,
1111–1124.
53 Park, H., Bak, G., Kim, S.C., and Lee, Y. (2013) Exploring sRNA-mediated gene
silencing mechanisms using artificial small RNAs derived from a natural RNA
scaffold in Escherichia coli. Nucleic Acids Res., 41 , 3787–3804.
54 Lease, R.A., Cusick, M.E., and Belfort, M. (1998) Riboregulation in Escherichia
coli: DsrA RNA acts by RNA:RNA interactions at multiple loci. Proc. Natl. Acad.
Sci. U.S.A., 95 , 12456–12461.
55 Majdalani, N., Cunning, C., Sledjeski, D., Elliott, T. et al. (1998) DsrA RNA
regulates translation of RpoS message by an anti-antisense mechanism,
independent of its action as an antisilencer of transcription. Proc. Natl. Acad.
Sci. U.S.A., 95 , 12462–12467.
56 Opdyke, J.A., Kang, J., and Storz, G. (2004) GadY, a small-RNA regulator of acid
response genes in Escherichia coli. J. Bacteriol., 186 , 6698–6705.
57 Antal, M., Bordeau, V., Douchin, V., and Felden, B. (2005) A small bacterial RNA
regulates a putative ABC transporter. J. Biol. Chem., 280 , 7901–7908.
58 Chen, S., Zhang, A., Blyn, L.B., and Storz, G. (2004) MicC, a second small-RNA
regulator of Omp protein expression in Escherichia coli. J. Bacteriol., 186 ,
6689–6697.
59 Vanderpool, C.K. and Gottesman, S. (2004) Involvement of a novel
transcriptional activator and small RNA in post-transcriptional regulation of the
glucose phosphoenolpyruvate phosphotransferase system. Mol. Microbiol., 54 ,
1076–1089.
60 Morita, T., Mochizuki, Y., and Aiba, H. (2006) Translational repression is
sufficient for gene silencing by bacterial small noncoding RNAs in the absence
of mRNA destruction. Proc. Natl. Acad. Sci. U.S.A., 103 , 4858–4863.
61 Li, Z., Reimers, S., Pandit, S., and Deutscher, M.P. (2002) RNA quality control:
degradation of defective transfer RNA. EMBO J., 21 , 1132–1138.
62 Andrade, J.M., Hajnsdorf, E., Régnier, P., and Arraiano, C.M. (2009) The
poly(A)-dependent degradation pathway of rpsO mRNA is primarily mediated
by RNase R. RNA (New York, N.Y.), 15 , 316–326.
63 Joanny, G., Le Derout, J., Bréchemier-Baey, D., Labas, V. et al. (2007)
Polyadenylation of a functional mRNA controls gene expression in Escherichia
coli. Nucleic Acids Res., 35 , 2494–2502.
64 Hajnsdorf, E., Braun, F., Haugel-Nielsen, J., and Régnier, P. (1995)
Polyadenylylation destabilizes the rpsO mRNA of Escherichia coli. Proc. Natl.
Acad. Sci. U.S.A., 92 , 3973–3977.
65 Cao, G.J. and Sarkar, N. (1992) Identification of the gene for an Escherichia coli
poly(A) polymerase. Proc. Natl. Acad. Sci. U.S.A., 89 , 10380–10384.
66 O’Hara, E.B., Chekanova, J.a., Ingle, C.A., Kushner, Z.R. et al. (1995)
Polyadenylylation helps regulate mRNA decay in Escherichia coli. Proc. Natl.
Acad. Sci. U.S.A., 92 , 1807–1811.
Free download pdf