A Practical Guide to Cancer Systems Biology
Transcriptomic Data Analysis 57 FastQC will generate a basic text and a HTML output file that contain all of the results, inclu ...
58 A Practical Guide to Cancer Systems Biology Mapping reads using TopHat or HISAT In this step, we demonstrated how to use two ...
Transcriptomic Data Analysis 59 Click “Execute” button to start the job. Repeat steps 1–7 for each set of pair-end data. Assem ...
60 A Practical Guide to Cancer Systems Biology Set “Transcripts” to the “merged transcripts” generated by Cuffmerge. In “Condit ...
...
62 A Practical Guide to Cancer Systems Biology interested in the analysis of other types of NGS dataset are directed to follow t ...
6. Proteomic Data Analysis: Functional Enrichment Hsin-Yi Chang and Hsueh-Fen Juan∗ Institute of Molecular and Cellular Biology, ...
64 A Practical Guide to Cancer Systems Biology Preparation — Download GSEA Java desktop application from the website: http:// ht ...
Proteomic Data Analysis 65 Figure 2. The organization of the cls file format for description of sample. The cls file consists ...
66 A Practical Guide to Cancer Systems Biology Figure 3. Load expression and phenotype files. 1. Click “Load data”; 2. Drag the ...
Proteomic Data Analysis 67 Set parameters and Run (Fig. 4). Figure 4. SetparametersappliedforGSEA.1.Click“RunGSEA”;2.Selec t e ...
68 A Practical Guide to Cancer Systems Biology Example results of GSEA (Fig. 5). Figure 5. An example of GSEA result. Normalized ...
Proteomic Data Analysis 69 III.Functional enrichment analysis using DAVID Upload the list of the differentially expressed prot ...
70 A Practical Guide to Cancer Systems Biology Run and obtain the results of functional enrichment analysis (Fig. 7).Figure 7. S ...
Proteomic Data Analysis 71 Figure 8. Save the results from DAVID. Save the chart results by right-clicking “Download File” and ...
72 A Practical Guide to Cancer Systems Biology IV.Data interpretation using EnrichmentMap Interpret GSEA results (Fig. 9). Figur ...
Proteomic Data Analysis 73 Interpret DAVID results (Fig. 10). Figure 10. Interpret DAVID results. To perform EnrichmentMap of ...
74 A Practical Guide to Cancer Systems Biology Matthiesen R. (2007) InMass Spectrometry Data Analysis in Proteomics, 121–138 (S ...
7. Phosphorylation Data Analysis Chia-Lang Hsu∗,‡and Wei-Hsuan Wang† ∗Department of Life Sciences, National Taiwan University, T ...
76 A Practical Guide to Cancer Systems Biology PhosphoPath^6 is a Cytoscape app designed for the visualization of protein- prote ...
«
1
2
3
4
5
6
7
8
»
Free download pdf