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266 11 The XML Transformation Language ... <!-- Change all occurrences of Protein to P --> <xsl:template match="Protein ...

11.3 Navigation and Computation 267 Transform 11.3 A modification of the program in transform 11.1 in which the inter ...

268 11 The XML Transformation Language ... <xsl:template match="Protein"> <P> <xsl:attribute name="averageBinding ...

11.4 Conditionals 269 Transform 11.5 A template that adds theidof the containing element as a new attribute operator is ...

270 11 The XML Transformation Language <xsl:choose> <xsl:when test="@bmi&lt;25"> Normal </xsl:when> <xs ...

11.5 Precise Formatting 271 <xsl:value-of select="BindingStrength[1]"/> but this should only be used in simple cases like ...

272 11 The XML Transformation Language the elements. Of course, it is better to view XML documents using an XML editor. Although ...

11.6 Multiple Source Documents 273 the ampersand character from&to&amp;These two characters have a spe- cial meaning in ...

274 11 The XML Transformation Language The first strategy can be accomplished by using the notion of an XML en- tity as discusse ...

11.7 Procedural Programming 275 Summary XSLT can process multiple input source files by using XML entities to in- clude one fil ...

276 11 The XML Transformation Language The procedure is called as follows: <xsl:call-template name="BindingStrengthAverage"/& ...

11.7 Procedural Programming 277 The name of the procedure isvariance. The set of elements to be used for the computation is ...

278 11 The XML Transformation Language <xsl:call-template name="variance"> <xsl:with-param name="elements" select="$ele ...

11.7 Procedural Programming 279 Here is an example of how this procedure would be called: As this example sugge ...

280 11 The XML Transformation Language 11.8 Exercises The following exercises use the BioML example in figure 1.3. Each exercise ...

12 Building Bioinformatics Ontologies Unstructured data, such as natural language text, and semistructured data, such as tables ...

282 12 Building Bioinformatics Ontologies veloped is a high quality one. An ontology is a precise formulation of the concepts th ...

12.1 Purpose of Ontology Development 283 Whatwill be covered by the ontology. This is also called itsscope.Aclear definition of ...

284 12 Building Bioinformatics Ontologies cover medically relevant events for patients and must also allow for personnel to make ...

12.2 Selecting an Ontology Language 285 Medical Personnel Ontologist Data Mining Tool Authorization Chart Database Chart Ontolog ...