The Lotus japonicus Genome
polymorphisms (SNPs), which are defined by whole-genome sequencing of accessions, are available (Huang et al. 2010 ; Han and Hua ...
Fiehn O, Wohlgemuth G, Scholz M (2005) Setup and annotation of metabolomic experiments by integrating biological and mass spectr ...
In vivo bioluminescence imaging of magnetically targeted bone marrow-derived mesenchymal stem cells in skeletal muscle injury mo ...
Nikolai L, Lewis M, Coutouly MA, Forsythe I, Tang P, Shrivastava S, Jeroncic K, Stothard P, Amegbey G, Block D, Hau DD, Wagner J ...
17 A Tutorial onLotus japonicus Transcriptomic Tools Jerome Verdier, Kaustav Bandyopadhyay, and Michael Udvardi Abstract Lotus j ...
18,144 cDNA clones derived from different organs (Kouchi et al. 2004 ), which allowed iden- tification of 860 and 1,076 genes, r ...
17.3 Update of Published “Affymetrix”Transcriptomes Recent years of research onL. japonicushave been marked by a rapid growth of ...
Table 17.1 Detailed description of Lotus published transcriptomes present in LjGEA Web server LjGEA ID Description Replicate Org ...
Table 17.1 (continued) LjGEA ID Description Replicate Organ Type of analysis Treatment Genotype Culture system Reference Species ...
Table 17.1 (continued) LjGEA ID Description Replicate Organ Type of analysis Treatment Genotype Culture system Reference Drought ...
Table 17.1 (continued) LjGEA ID Description Replicate Organ Type of analysis Treatment Genotype Culture system Reference Nodulat ...
Table 17.1 (continued) LjGEA ID Description Replicate Organ Type of analysis Treatment Genotype Culture system Reference Nodulat ...
Table 17.1 (continued) LjGEA ID Description Replicate Organ Type of analysis Treatment Genotype Culture system Reference Nodulat ...
raw data collected from different experiments, the quantile method with Robust Multichip Average (RMA) was used (Irizarry 2003 ) ...
is known. Partial sequence of genomic DNA is not recommended since the program may notfind a sequence from an intron. There are ...
different genes. Alignments are also given in the case of BLAST searches. 17.4.3 Final Analyses The LjGEA Web server not only pr ...
17.5 Gene Regulatory Networks: The LegumeGRN Web Server Gene expression datasets provide snapshots of the transcriptomes of plan ...
display has several features such as zoom in/ zoom out and move options. Each node with its connection strength and prediction a ...
the most relevant connections according to the confidence ranking generated by the algorithm. Finally, a module to identify sign ...
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, ...
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