BIOINORGANIC CHEMISTRY A Short Course Second Edition

500 INDEX potassium ion channels and, 211, 217f, 221, 223, 224, 230 van der Waals forces, 37–38, 163, 167, 211, 299, 316 –317, 3 ...

INDEX 501 methane monooxygenase structure and, 459–460 myoglobin structure and, 83, 146 –148, 344–345, 351t, 352t, 353, 358, 372 ...

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Figure 2.22 Zinc - fi nger – DNA interactions for PDB: 1ZAA as described in reference 31 and the text. Visualized using The PyMO ...

gly188 ser189 gly190 asn153, thr154 asp171 met125, asn126, arg127 ser207 residues 242-248 leu147 PDB: 1RMZ B A 1BL8 Top-Down Vie ...

B 1BL8 Side View Extracellular Side membrane membrane Intracellular Side 34 Å Figure 5.5 (Continued) (B) Side view of the K + io ...

S4, cyan S1, red S2 S5, red G200 tyr199 gly198 val197 thr196 K+ ions gly220 asp62 arg126 arg123 arg133 arg120 arg117 S3b, rose S ...

Figure 5.8 Closed and opened views of the potassium ion channel pore according to reference 25. S4 helix of PDB: 1ORQ. Visualize ...

C–G U A G–C G U U G C–G C–G C–G G–C U–A C–G A–UG–C UAGA AAU A–U C–G C–GU•180AU GGG A G U G A A A A G U G U C–G AAGG P4–P6 P1–P2. ...

da+1 M 1 potassium ions magnesium ions dt-1 ΩG in spacefill P2 tetraloop (stick format) P8 receptor U1A loop gray P6 greenP3 gre ...

C88 A172 A+1 P Mg 2 Mg 1 O1P, C88 G170 O1P, G170 O1P, A172 O2P, A172 exon-exon bond formationnucleophile O3’, U-1 leaving group ...

SR Membrane M7 - M10 green M1 - M2 magenta M3 - M6 orange Domain A, 1-43, 124-235 yellow Domain N, 360-600 red Domain P, 330-359 ...

α 2 α 1 β 2 β 1 H+ e- e- e- e- heme f heme bp heme bn chlorophyll a heme x TDS Cytochrome b(6)f PDB: 1VF5 Electron transfer Prot ...

Figure 7.30 Comparison of cytochrome bc structures: (A) PDB: 1PP9 with inhibitor stigmatellin; and (B) PDB: 1PPJ with inhibitors ...

PDB: 1NTK in cyan. PDB: 1PPJ in green. his201 ser205 lys227 asp228 ser35 helix D helix A helix E antimycin A amide bridge flips ...

lys8 lys86, 87 lys72 lys60 his33 PDB: 1LC1, colors PDB: 1GIW, green turn 1 turn 2 Figure 7.34 Two horse cytochrome c molecules, ...

CuA CuB A PDB: 1V54, green PDB: 1V55, cyan Bos taurus H-bond network, black asp51 heme a heme a 3 lys265 begins the K pathway as ...

arg644 ser642, back ser643 arg644, front isocitrate glu262, back arg452, front asn446 his167 cys358, back asn258, back his147 cy ...

Zinc ion Dinuclear Copper Ion Mononuclear Copper Ion PDB: 1YEW pmoB: cyan pmoA: yellow pmoC: red Figure 7.51 Particulate MMO, pM ...